92. Adam C Martiny. The ‘1% culturability paradigm’ needs to be carefully defined. ISME J. 2019.

91. Adam J Fagan, Allison R Moreno, and Adam C Martiny. Role of ENSO conditions on particulate organic matter concentrations and elemental ratios in the Southern California Bight. Front. Mar. Sci. 2019.

90. Adam C Martiny, Michael W Lomas, Weiwei Fu, Philip W Boyd, Yuh-ling L Chen, Gregory A Cutter, Michael J Ellwood, Ken Furuya, Fuminori Hashihama, Jota Kanda, David M Karl, Taketoshi Kodama, Qian P Li, Jian Ma, Thierry Moutin, E Malcolm S Woodward, and J Keith Moore. Biogeochemical controls of surface ocean phosphate. Science Advances. 2019.

89. Adam C Martiny, Lucas Ustick, Catherine Garcia, and Michael W Lomas. Genomic adaptation of marine phytoplankton populations regulates phosphate uptake. Limnol. Oceanogr. 2019.

88. Sydney I Glassman, Adam C Martiny, and Jennifer BH Martiny. Resolving biodiversity-ecosystem functioning relationships through microbial traits. In revision. 2019.

87. Benjamin S Twining, Sara Rauschenberg, Steven E Baer, Michael W Lomas, Adam C Martiny, and Olga Antipova. A nutrient limitation mosaic in the eastern tropical Indian Ocean. Deep-Sea Res. II. 2019.

86. Kazuo Isobe, Steven D Allison, Banafshe Khalili, Adam C Martiny, Jennifer BH Martiny. Phylogenetic conservation of bacterial responses to soil nitrogen addition across continents. Nature Comm. 10:2499. 2019.

85. Ashish A Malik, Jennifer BH Martiny, Eoin L Brodie, Adam C Martiny, Kathleen K Treseder and Steven D. Allison. Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. ISME J. In press. 2019

84. Adam C Martiny. High proportions of bacteria are culturable across major biomes. ISME J. 2019.

83. Alyse A Larkin, Catherine A Garcia, Kimberly A Ingoglia, Nathan Garcia, Steven E Baer, Benjamin S Twining, Michael W Lomas, and Adam C Martiny. Frequency of Prochlorococcus haplotypes identifies subtle biogeochemical regimes in the Indian Ocean. Limnol. Oceanogr.. 2019.

82. Dedmer B Van de Waal, James J Elser, Adam C Martiny, Robert W Sterner, James Cotner. Progress in Ecological Stoichiometry. Front. Microbiol. 2018. doi: 10.3389/fmicb.2018.01957.

81. Sydney I Glassman, Claudia Weihe, Junhui Li, Michaeline BN Albright, Caitlin Looby, Adam C Martiny, Kathleen K Treseder, Steven D Allison, and Jennifer BH Martiny. Decomposition responses to climate depend on microbial community composition. PNAS. 2018.

80. Alexander B Chase, Zulema Gomez-Lunar, Alberto E Lopez, Junhui Li, Steven D Allison, Adam C Martiny, and Jennifer BH Martiny. Emergence of soil bacterial ecotypes along a climate gradient. Environ. Microbiol. 2018.

79. Alyssa G Kent, Steven E Baer, Céline Mouginot, Jeremy Huang, Alyse A Larkin, Michael W Lomas, and Adam C Martiny. Parallel phylogeography of Prochlorococcus and Synechococcus. ISME J. 2018.

78. Wei-Lei Wang, J Keith Moore, Adam C Martiny, and Francois Primeau. Convergent Estimates of Marine Nitrogen Fixation. Nature. 566: 205211. 2019.

77. Kathleen K Treseder, Renaud Berlemont, Steven D Allison, and Adam C Martiny. Drought increases the frequencies of fungal functional genes related to carbon and nitrogen acquisition. PLoS One 13(11): e0206441. 2018.

76. Kathleen K Treseder, Renaud Berlemont, Steven D Allison, and Adam C Martiny. Nitrogen enrichment shifts functional genes related to nitrogen and carbon acquisition in the fungal community. Soil Biol. Biochem. 123, 87-96. 2018.

75. Krista A Linzner, Alyssa G Kent, and Adam C Martiny. Evolutionary pathway determines the stoichiometric response of Esherichia coli adapted to high temperature. Frontiers Ecol. Evol. Biol. 2018.

74. Catherine Garcia, Steven E Baer, Nathan S Garcia, S Rauschenberg, Benjamin S Twining, Michael W Lomas, Adam C Martiny. Nutrient supply controls particulate elemental concentrations and ratios in the low latitude eastern Indian Ocean. Nature Comm. 9, Article number: 4868. 2018.

73. Steven E Baer, Sara Rauschenberg, Catherine A Garcia, Nathan S Garcia, Adam C Martiny, Benjamin S Twining, Michael W Lomas. Biogeochemistry of the oligotrophic eastern Indian Ocean. Deep-Sea Res. II.  2018.

72. Alexander B Chase, Ulas Karaoz, Eoin L Brodie, Zulema Gomez-Lunar, Adam C Martiny, and Jennifer BH Martiny. Microdiversity of an abundant terrestrial bacterium encompasses extensive variation in ecologically-relevant traits. mBio 8:e01809-17. doi: 10.1128/mBio.01809-17. 2017.

71. Allison Moreno, George I Hagstrom, Francois Primeau, Simon Levin, Adam C Martiny.  Marine Phytoplankton Stoichiometry Mediates Nonlinear Interactions Between Nutrient Supply, Temperature, and Atmospheric CO2. Biogeosci.. doi: 10.5194/bg-2017-367. 2018.

70. Alyssa G Kent, Catherine Garcia, and Adam C Martiny. Marine bacterial lifestyle change due to adaptation to high temperature. Nature Microbiol. 2018.

69. Allison R Moreno and Adam C Martiny. Ecological Stoichiometry of marine plankton. Annu. Rev. Mar Sci..10. 2018.

68. Nathan S Garcia, Julie Sexton, Jeff Brown, Tracie Riggins, Michael W Lomas, and Adam C Martiny. High variability in cellular stoichiometry of carbon, nitrogen, and phosphorus within classes of marine eukaryotic phytoplankton under sufficient nutrient conditions. Front. Microbiol. doi: 10.3389/fmicb.2018.00543. 2018.

67. Alyse A Larkin and Adam C Martiny. Microdiversity shapes the traits, niche space, and biogeography of microbial taxa. Environ. Microbiol. 9: 55–70. 2017. doi:10.1111/1758-2229.12523.

66. Adam C. Martiny, Lanying Ma, Céline Mouginot, and Erik R. Zinser. Interactions between thermal acclimation, growth rate, and phylogeny Influence Prochlorococcus elemental stoichiometry. PLoS One. 2016.

65. George I Hagstrom, Simon A Levin, and Adam C Martiny. Resource ratios determine nutrient limitation of primary productivity in the ocean. In review. 2019.

64. Pedro Flombaum, Wei-Lei Wang, Francois Primeau, and Adam C Martiny. Picophytoplankton lineages display clear niche partitioning but overall positive response to future ocean warming. In revision. 2019.

63. Steven E Baer, Michael W Lomas, Kristina X Terpis, Celine Mouginot, and Adam C Martiny. Stoichiometry of Prochlorococcus, Synechococcus, and small eukaryotic populations in the western North Atlantic Ocean. Env. Microbiol. 19: 1568–1583. 2017. doi:10.1111/1462-2920.13672.

62. Agathe Talarmin, Michael W Lomas, Yann Bozec, Nicolas Savoye, Helen Frigstad, David Karl, and Adam C Martiny. Seasonal and long-term changes in elemental concentrations and ratios of marine particulate organic matter. Global Biogeochem Cy. 30, 16991711, doi:10.1002/2016GB005409. 2016.
61. Michaeline Nelson, Adam C Martiny, and Jennifer BH Martiny. Global Biogeography of Microbial Nitrogen-Cycling Traits in Soil. PNAS. 113:8033-8040. 2016.

60. Renaud Berlemont and Adam C Martiny. Macro eco-evolutionary patterns of carbohydrate processing in microbial communities. PLoS Comp. Biol. 2016.

59. Jennifer BH Martiny, Adam C Martiny, Claudia Weihe, Ying Lu, Renaud Berlemont, Eoin L Brodie, Michael L Goulden, Kathleen K Treseder, and Steven D Allison. Microbial legacies alter decomposition in response to simulated global change. ISME J. 2016.

58. Johann L Lopez, Nathan S Garcia, David Talmy, and Adam C Martiny. Diel variability in the elemental composition of the marine cyanobacterium Synechococcus. J. Plankt. Res. 38 (4): 1052-1061. 2016.

57. David Talmy, Adam C Martiny, C. Hill, Anne E Hickman, and Mick Follows. Zooplankton regulation of surface ocean POC:PON ratios. Global Biogeochem Cy. 2016. DOI: 10.1002/2015GB005273.

56. Nathan S Garcia, Juan A Bonachela, and Adam C Martiny. Growth-dependent cell size controls interactions between nutrient supply and cellular elemental stoichiometry of marine Synechococcus. ISME J. 10, 2715–2724. 2016.

55. Jennifer BH Martiny, Stuart Jones, Jay T Lennon, and Adam C Martiny. Microbiomes in light of traits: a phylogenetic perspective. Science. 350:6261:aac9323. 2015.

54. Adam C Martiny, Agathe Talarmin, Céline Mouginot, Jeanette A Lee, Jeremy S Huang, Alyssa G Gellene, and David A Caron. Biogeochemical interactions control a temporal succession in the elemental composition of marine communities. Limnol. Oceanogr. 61: 531–542. 2016.

53. Aravind Singh, Steven E Baer, Ulf Riebesell, Adam C Martiny, and Michael W. Lomas. C:N:P stoichiometry at the Bermuda Atlantic Time-series station in the North Atlantic Ocean. Biogeosci., 12, 6389-6403. 2015.

52. Alyssa G Kent, Christopher L Dupont, Shibu Yooseph, Adam C Martiny. Global biogeography of Prochlorococcus genome diversity in the surface ocean. ISME J. 10:1856-65. 2016. doi: 10.1038/ismej.2015.265.

51. Michaeline Nelson, Renaud Berlemont, Adam C Martiny, and Jennifer B.H. Martiny. Nitrogen Cycling Potential of a Grassland Plant Litter Microbial Community. Appl. Environ. Microbiol. 81:20:7012-22. 2015.

50. Anthony S Amend, Adam C Martiny, Steven D Allison, Renaud Berlemont, Michael L Goulden, Ying Lu, Kathleen K Treseder, Claudia Weihe, Jennifer BH Martiny. Microbial response to simulated global change is phylogenetically conserved and correlated with functional potential. ISME J. 10, 109–118. 2016.

49. Eric Galbraith and Adam C Martiny. A simple nutrient-dependence mechanism for predicting the stoichiometry of marine ecosystems. PNAS. 112:27:8199-8204 2015.

48. C­éline Mouginot, Amy E Zimmerman, Juan A Bonachela, Helen Fredricks, Steven D Allison, Benjamin AS Van Mooy, and Adam C Martiny. Resource allocation by the marine cyanobacterium Synechococcus WH8102 in response to different nutrient supply ratios. Limnol. Oceanogr. 60:5:1634-41. doi: 10.1002/lno.10123. 2015.

47. Renaud Berlemont and Adam C Martiny. Genomic potential for polysaccharides deconstruction in bacteria. Appl. Environ. Microbiol. 81:4:1513-19. 2015.

46. Cécilia B Kretz, Doug W Bell, Debra A Lomas, Michael W Lomas, and Adam C Martiny. Influence of growth rate on the physiological response of marine Synechococcus to phosphate limitation. Front. Microbiol. 6:85. 2015.

45. Stephen M Hatosy and Adam C Martiny. The ocean as a global reservoir of antibiotic resistance genes. Appl. Environ. Microbiol. 81:21:7593-99. 2015

44. Michael W Lomas, Juan A Bonachela, Simon A Levin, and Adam C Martiny. Impact of ocean phytoplankton diversity on phosphate uptake. PNAS. 111:49:17540-17545. 2014.

43. Adam C Martiny, Jasper A Vrugt, and Michael W Lomas. Concentrations and ratios of particulate organic carbon, nitrogen, and phosphorus in the global ocean. Sci. Dat. 1, 140048. doi:10.1038/sdata.2014.48. 2014.

42. Kristin L Matulich, Claudia Weihe, Steven D Allison, Anthony S Amend, Renaud Berlemont, Mike Goulden, Sarah Kimball, Adam C Martiny, and Jennifer BH Martiny. Temporal variation overshadows the response of leaf litter microbial composition to simulated global change. ISME J. 9:2477-89. 2015.

41. Paul M Berube, Steven J Biller, Alyssa G Kent, Jessie W Thompson, Sara E Roggensack, Kathryn H Roache-Johnson, Marcia Ackerman, Lisa R Moore, Joshua D Meisel, Daniel Sher, Luke R Thompson, Lisa Campbell, Adam C Martiny, and Sallie W Chisholm. Physiology and evolution of nitrate acquisition in Prochlorococcus. ISME J. 9:1195–1207. 2015.

40. Yi-Cheng Teng, Francois W Primeau, J Keith Moore, Michael W Lomas, and Adam C Martiny. Global-scale variations in the carbon to phosphorous ratio of exported marine organic matter. Nature Geo. 7, 895–898. doi:10.1038/ngeo2303. 2014.

39. Zackary I Johnson and Adam C Martiny. New tools for quantifying phytoplankton community structure. Annu. Rev. Mar. Sci. 7:1:299-324. DOI: 10.1146/annurev-marine-010814-015902. 2015.

38. Steven D Allison, Ying Lu, Alyssa Kent, and Adam C Martiny. Extracellular enzyme production and cheating in Pseudomonas fluorescens depend on diffusion rates. Front. Microbiol., 11 April 2014 | doi: 10.3389/fmicb.2014.00169.

37. Céline Mouginot, Rika Kawamura, Kristin Matulich, Renaud Berlemont, Steven D Allison, Anthony S Amend, and Adam C Martiny. Elemental stoichiometry of Fungi and Bacteria strains from grassland leaf litter. Soil Biol. Biochem. 76:278-285. DOI: 10.1016/j.soilbio.2014.05.011. 2014.

36. Renaud Berlemont, Steven D Allison, Claudia Weihe, Ying Lu, Eoin L Brodie, Jennifer BH Martiny, and Adam C Martiny. Cellulolytic potential under environmental changes in microbial communities from grassland litter. Front. Microbiol., doi: 10.3389/fmicb.2014.00639. 2014.

35. Amy E Zimmerman, Adam C Martiny, Michael W Lomas, and Steven D Allison. Phosphate supply explains variation in nucleic acid allocation but not C:P stoichiometry in the Western North Atlantic. Biogeosciences, 11:1599-1611, doi:10.5194/bg-11-1599-2014. 2014.

34. Mari Nyyssönen, Huu M Tran, Ulas Karaoz, Claudia Weihe, Masood Z Hadi, Jennifer BH Martiny, Adam C Martiny, and Eoin L. Brodie. Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. Front. Microbiol., 23 September 2013 | doi: 10.3389/fmicb.2013.00282.

33. Desiree Unsworth, Adam C Martiny, and Jeffrey A. Russell. Presence of Staphylococcus aureus in a university dance environment. J. Dance Med. Sci. 18:3:115-120. 2014.

32. Cecilia Batmalle, Hsin-I Chiang, Kun Zhang, Michael W Lomas, and Adam C Martiny. Development and bias assessment of a method for targeted metagenomic sequencing of marine Cyanobacteria. Appl. Environ. Microbiol.  80(3):1116. DOI: 10.1128/AEM.02834-13. 2014.

31. Amy Zimmerman, Steven D Allison, and Adam C Martiny. Elemental stoichiometry and resource allocation in heterotrophic marine bacteria. Env. Microbiol. 16:5:1398–1410. DOI: 10.1111/1462-2920.12329. 2014.

30. Adam C Martiny, Jasper A Vrugt, Francois W. Primeau, and Michael W Lomas. Regional variation in the particulate organic carbon to nitrogen ratio in the surface ocean. Global Biogeochem Cy 27:723-731, doi:10.1002/gbc.20061,  2013.

29. Pedro Flombaum, José L Gallegos, Rodolfo A Gordillo, José Rincón, Lina L Zabala, Nianzhi Jiao, David M Karl, William KW Li, Michael W Lomas, Daniele Veneziano, Carolina S Vera, Jasper A Vrugt, and Adam C Martiny. Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus PNAS. 110:24:9824-9829 2013.

28. Stephen M Hatosy, Jennifer BH Martiny, Rohan Sachdeva, Joshua Steele, Jed A Fuhrman, and Adam C Martiny. Beta-diversity of marine bacteria depends on temporal scale. Ecology, 94:9:1898–1904, 2013.

27. Renaud Berlemont and Adam C Martiny. Phylogenetic distribution of potential cellulases in bacteria. Appl. Environ. Microbiol. 79:5:1545-54. 2013.

26. Juan A Bonachela, Steven D Allison, Adam C Martiny, and Simon A Levin. A model for variable phytoplankton stoichiometry based on cell protein regulation. Biogeosciences, 10:4341-4356, 2013.

25. Amy Zimmerman, Adam C Martiny, and Steven Allison. Fine-scale phylogenetic clustering of resource-acquiring enzyme genes among sequenced prokaryotic genomes. doi:10.1038/ismej.2012.176. ISME J. 7:1187–1199. 2013.

24. Steven D Allison, Ying Lu, Claudia Weihe, Michael L Goulden, Adam C Martiny, Kathleen K Treseder, Jennifer BH Martiny. Microbial abundance and composition influence litter decomposition response to environmental change. Ecology 94:714–725. 2013.

23. Adam C Martiny, Kathleen Treseder, and Gordon Pusch. Phylogenetic conservatism of functional traits in microorganisms. ISME J 7:830–838. 2013.

22. Adam C Martiny, Chau TA Pham, Francois W Primeau, Jasper A Vrugt, J Keith Moore, Simon A Levin, and Michael W Lomas. Strong latitudinal patterns in the elemental ratios of marine plankton and organic matter. Nature Geo. 6:4:279-283 2013.

21. Anthony S Amend, Tom A Oliver, Linda A Amaral-Zettler, Antje Boetius, Jed A Fuhrman, M Claire Horner-Devine, Susan M Huse, David B Mark Welch, Adam C Martiny, Alban Ramette, Lucie Zinger, Mitchell L Sogin, Jennifer BH Martiny. Macroecological Patterns of Marine Bacteria on a Global Scale. J. Biogeography. 40:800–811. 2012.

20. Steven D Allison, Yi Chao, John D Farrara, Stephen Hatosy, and Adam C Martiny. Fine-scale temporal variation in marine ectoenzymes of coastal southern California. Front. Microbio. 3:301. doi: 10.3389/fmicb.2012.00301. 2012.

19. Sara Freitas, Stephen M Hatosy, Jed A Fuhrman, Susan M. Huse, David B Mark Welch, Michell L Sogin, and Adam C Martiny. Global distribution and diversity of marine Verrucomicrobia. ISME J. 6:1499–1505. 2012.

18. Adam C Martiny, Jennifer BH Martiny, Claudia Weihe, Andrew Field, and Julie Ellis. Functional metagenomics reveals previously unrecognized diversity of antibiotic resistance genes in gulls. Front. Microbio. 2:238. doi: 10.3389/fmicb.2011.00238. 2011.

17. Satish K Kathuria, and Adam C Martiny. Prevalence of a calcium-based alkaline phosphatase associated with the marine cyanobacterium Prochlorococcus and other ocean bacteria. Environ. Microbiol. 13:74-83. 2011.

16. Douglas Rusch, Adam C Martiny, Chris L Dupont, Aaron L Halpern, and J Craig Venter. Characterization of Prochlorococcus clades from iron depleted oceanic regions. PNAS 107:16184-89. 2010.

15. Rex R Malmstrom, Allison Coe, Gregory C Kettler, Adam C Martiny, Jorge Frias-Lopez, Erik R Zinser, and Sallie W Chisholm. Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans. ISME J. 4:10:1252-64. 2010

14. Adam C Martiny, SK Kathuria, and Paul Berube. Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes. PNAS 106:10787-92 2009. 2009.

13. Aam C Martiny, Ying Huang, and W Li. Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions. Environ. Microbiol. 11:1340-47. 2009.

12. Adam C Martiny, Amos PK Tai, Daniele Veneziano, Francois Primeau, and Sallie W Chisholm. Taxonomic resolution, ecotypes, and the biogeography of Prochlorococcus. Environ. Microbiol. 11:823-32. 2009.

11. M Claire Horner-Devine, and Adam C Martiny. News about Nitrogen. Science 320:757-758. 2008.

10. *Greg Kettler, *Adam C Martiny, Katherine Huang, Jeremy Zucker, Maureen L Coleman, Sebastien Rodrigue, F Chen, Alla Lapidus, Steve Ferriera, Justin Johnson, Claudia Steglich, Paul Richardson, George M Church, and Sallie W Chisholm. Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus. PLoS Genet. 3(12): e231. 2007.

9. *Adam C Martiny, Maureen L Coleman, and Sallie W Chisholm. Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation. PNAS 103:12552-12557. 2006.

8. Kun Zhang, Adam C Martiny, NB Reppas, Karrie W Barry, J Malek, Sallie W Chisholm and George M Church. Sequencing of genomes from single cells with polymerase cloning. Nature Biotech., 24:680-86. 2006.

7. Maureen L Coleman, Matthew B Sullivan, Adam C Martiny, Claudia Steglich, Edward F DeLong, and Sallie W Chisholm. Genomic islands and the ecology and evolution of Prochlorococcus. Science 311:1768-70. 2006.

6. Zinzer, E.R, Coe, A., Johnson, Z.I.,Martiny, A.C., Fuller, N.J., Scanlan, D.J., and S.W. Chisholm. Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method. Appl. Env. Microbiol. 72:723-732. 2006.

5. Adam C Martiny, Hans-Jørgen Albrechtsen, Erik Arvin and Søren Molin. Identification of biofilm and bulk water bacteria in a non–chlorinated model drinking water distribution system: Detection of a large nitrite oxidizing population associated with Nitrospira. Appl. Env. Microbiol. 71:8611-8617. 2005.

4. Anne-Christine Holm, Adam C Martiny, Jacob Hoffman-Bang, Birgitte K Ahring, and Mogens Kilstrup. Identification of bacteria from archeological wood. Int. Biodeter. and Bioeng. 53:79-88. 2004.

3. Adam C Martiny, Thomas M. Jørgensen, Hans-Jørgen Albrechtsen, Erik Arvin and Søren Molin. 2003. Long-term succession in structure and diversity of a biofilm formed in a model drinking water distribution system. Appl. Env. Microbiol. 69:6899-6907

2. Rasmus Boe-Hansen, Adam C Martiny, Erik Arvin and Hans-Jørgen Albrechtsen.  Monitoring biofilm formation and activity in drinking water distribution networks under oligotrophic conditions. Wat. Sci. Tech. 47 (5) 91 – 97. 2003.

1. Adam C Martiny, Alex T Nielsen, Erik Arvin, Søren Molin and Hans-Jørgen Albrechtsen. In situ examination of microbial populations in a model drinking water distribution system. Wat. Sci. Tech.: Wat. Suppl., 2, 283-288. 2002.

*Contributed equally to this work

Author's in bold are from the A. Martiny Lab


Publications – Book chapters

3. Alyse A Larkin, Katherine RM Mackey, and Adam C Martiny. Marine Cyanobacteria: Prochlorococcus and Synechococcus. Encyclopedia of Ocean Science. 3rd Edition. 2018.

2. Adam C Martiny, Ying Huang, and W Li. Adaptation to Nutrient Availability in Marine Microorganisms by Gene Gain and Loss. Molecular Ecology Handbook 2:26:269-276. 2011.

1. Hans-Jørgen Albrechtsen, Adam C Martiny, Erik Arvin, and Søren Molin. Biofilmdannelse i ledningsnet : populationssammensætning i vand- og biofilmprøver (in Danish). Vandforsyningsteknik 55:35-43. 2006.

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