32. Cecilia Batmalle, Hsin-I Chiang, Kun Zhang, Michael W. Lomas, and Adam C. Martiny. Development and bias assessment of a method for targeted metagenomic sequencing of marine Cyanobacteria. In review. 2013.

31. Amy Zimmerman, Steven D. Allison, and Adam C. Martiny. Elemental stoichiometry and resource allocation in heterotrophic marine bacteria. In review. 2013.

30. Adam C. Martiny, Jasper A. Vrugt, Francois W. Primeau, and Michael W. Lomas. Regional variation in the particulate organic carbon to nitrogen ratio in the surface ocean. In review. 2013.

29. Pedro Flombaum, José L. Gallegos, Rodolfo A. Gordillo, José Rincón, Lina L. Zabala, Nianzhi Jiao, David M. Karl, William K. W. Li, Michael W. Lomas, Daniele Veneziano, Carolina S. Vera, Jasper A. Vrugt, and Adam C. Martiny. Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. In press, PNAS, 2013.

28. Stephen M. Hatosy, Jennifer B. H. Martiny, Rohan Sachdeva, Joshua Steele, Jed A. Fuhrman, and Adam C. Martiny. Beta-diversity of marine bacteria depends on temporal scale. Ecology, 2013.

27. Renaud Berlemont and Adam C. Martiny. Phylogenetic distribution of potential cellulases in bacteria. Appl. Environ. Microbiol. 79:5:1545-54. 2013.

26. Juan A. Bonachela, Steven D. Allison, Adam C. Martiny, and Simon A. Levin. A model for variable phytoplankton stoichiometry based on cell protein regulation. Biogeosciences Discuss., 10, 3241-3279, doi:10.5194/bgd-10-3241-2013, 2013.

25. Amy Zimmerman, Adam C. Martiny, and Steven Allison. Fine-scale phylogenetic clustering of resource-acquiring enzyme genes among sequenced prokaryotic genomes. doi:10.1038/ismej.2012.176. ISME J. 2013.

24. Steven D. Allison, Ying Lu, Claudia Weihe, Michael L. Goulden, Adam C. Martiny, Kathleen K. Treseder, Jennifer B. H. Martiny. Microbial abundance and composition influence litter decomposition response to environmental change. Ecology. 2013

23. Adam C. Martiny, Kathleen Treseder, and Gordon Pusch. Phylogenetic conservatism of functional traits in microorganisms. ISME J 7:830–838. 2013.

22. Adam C. Martiny, Chau T. A. Pham, Francois W. Primeau, Jasper A. Vrugt, J. Keith Moore, Simon A. Levin, and Michael W. Lomas. Strong latitudinal patterns in the elemental ratios of marine plankton and organic matter. Nature Geoscience. 2013.

21. Anthony S. Amend, Tom A. Oliver, Linda A. Amaral-Zettler, Antje Boetius, Jed A. Fuhrman, M. Claire Horner-Devine, Susan M. Huse, David B. Mark Welch, Adam C. Martiny, Alban Ramette, Lucie Zinger, Mitchell L. Sogin, Jennifer B. H. Martiny. Macroecological Patterns of Marine Bacteria on a Global Scale. J. Biogeography. 2012.

20. Steven D. Allison, Yi Chao, John D. Farrara, Stephen Hatosy, and Adam C. Martiny. Fine-scale temporal variation in marine ectoenzymes of coastal southern California. Front. Microbio. 3:301. doi: 10.3389/fmicb.2012.00301. 2012.

19. Freitas, S.,Hatosy, S., Fuhrman, J.A., Huse, S.M., Mark Welch, D.B., Sogin, M.L., and A.C. Martiny. Global distribution and diversity of marine Verrucomicrobia. ISME Journal 6, 1499–1505. 2012.

18. Martiny, A.C., Martiny, J.B.H., Weihe, C., Field, A., and J. Ellis. Functional metagenomics reveals previously unrecognized diversity of antibiotic resistance genes in gulls. Front. Microbio. 2:238. doi: 10.3389/fmicb.2011.00238. 2011.

17. Kathuria, S.K. and A.C. Martiny. Prevalence of a calcium-based alkaline phosphatase associated with the marine cyanobacterium Prochlorococcus and other ocean bacteria. Environ. Microbiol. 13:74-83. 2011.

16. Rusch, D.B., Martiny, A.C., Dupont, C.L., Halpern, A.L., and J.C. Venter. Characterization of Prochlorococcus clades from iron depleted oceanic regions. PNAS 107:16184-89. 2010.

15. Malmstrom, R.R., Coe, A., Kettler, G.C., Martiny, A.C., Frias-Lopez, J., Zinser, E.R, and S.W. Chisholm. Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans. ISME J. 2010

14. Martiny, A.C., Kathuria, S.K., and P. Berube. Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes. PNAS 106:10787-92 2009. 2009.

13. Martiny, A.C., Huang, Y. and W. Li. Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions. Environ. Microbiol. 11:1340-47. 2009.

12. Martiny, A.C., Tai, A.P.K., Veneziano, D., Primeau, F. and S.W. Chisholm. Taxonomic resolution, ecotypes, and the biogeography of Prochlorococcus. Environ. Microbiol. 11:823-32. 2009.

11. Horner-Devine, M.C. and A.C. Martiny. News about Nitrogen. Science 320:757-758. 2008.

10. *Kettler, G., *Martiny, A.C., Huang, K., Zucker, J., Coleman, M.L., Rodrigue, S., Chen, F., Lapidus, A.,Ferriera, S., Johnson, J., Steglich, C., Richardson, P., Church, G.M. and S.W. Chisholm. Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus. PLoS Genet. 3(12): e231. 2007.

9. *Martiny, A.C., *Coleman, M.L. and S.W. Chisholm. Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation. PNAS 103:12552-12557. 2006.

8. Zhang, K., Martiny, A.C., Reppas, N.B., Barry, K.W., Malek, J., Chisholm, S.W. and G.M. Church. Sequencing of genomes from single cells with polymerase cloning. Nature Biotech., 24:680-86. 2006.

7. Coleman, M.L., Sullivan, M.B., Martiny, A.C., Steglich, C., DeLong, E.F., and S.W. Chisholm. Genomic islands and the ecology and evolution of Prochlorococcus. Science 311:1768-70. 2006.

6. Zinzer, E.R, Coe, A., Johnson, Z.I.,Martiny, A.C., Fuller, N.J., Scanlan, D.J., and S.W. Chisholm. Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method. Appl. Env. Microbiol. 72:723-732. 2006.

5. Martiny, A.C., Albrechtsen, H.-J., Arvin, E., and S. Molin. Identification of biofilm and bulk water bacteria in a non–chlorinated model drinking water distribution system: Detection of a large nitrite oxidizing population associated with Nitrospira. Appl. Env. Microbiol. 71:8611-8617. 2005.

4. Holm, A.-C., Martiny, A.C., Hoffman-Bang, J., Ahring, B.K., and M. Kilstrup. Identification of bacteria from archeological wood. Int. Biodeter. and Bioeng. 53:79-88. 2004.

3. Martiny, A.C., Jørgensen, T.M., Albrechtsen, H.-J., Arvin, E., and S. Molin. 2003. Long-term succession in structure and diversity of a biofilm formed in a model drinking water distribution system. Appl. Env. Microbiol. 69:6899-6907

2. Boe-Hansen, R., Martiny, A.C., Arvin, E., and H.-J. Albrechtsen.  Monitoring biofilm formation and activity in drinking water distribution networks under oligotrophic conditions. Wat. Sci. Tech. 47 (5) 91 – 97. 2003.

1. Martiny, A.C., Nielsen, A.T., Arvin, E., Molin, S., and H.-J. Albrechtsen. In situ examination of microbial populations in a model drinking water distribution system. Wat. Sci. Tech.: Wat. Suppl., 2, 283-288. 2002.

*Contributed equally to this work

Author's in bold are from the A. Martiny Lab

 

Publications – Book chapters

2. Martiny, A.C., Huang, Y., and W. Li. Adaptation to Nutrient Availability in Marine Microorganisms by Gene Gain and Loss. Molecular Ecology Handbook 2:26:269-276. 2011.

1. Albrechtsen, H.-J., Martiny, A.C., Arvin, E., and S. Molin. Biofilmdannelse i ledningsnet : populationssammensætning i vand- og biofilmprøver (in Danish). Vandforsyningsteknik 55:35-43. 2006.

 

Recent conference presentations

J.A. Lee, C. Mouginot, S.M. Hatosy, A. Talarmin & A.C. Martiny. Variability of the C:N:P ratios of the particulate organic matter at Newport Neach Pier. Southern California Geobiology Conference, Caltech, 2013

C. Mouginot, E.A. Lee & A.C. Martiny. Resource allocation by a marine cyanobacteria in response to different suppy ratios. Southern California Geobiology Conference, Caltech, 2013

C.S. Batmalle, S. Hsin-i, K. Zhang, M.W. Lomas, A.C Martiny. Temporal and spatial variations in genome content of Prochlorococcus and Synechococcus populations. Southern California Geobiology Conference, Caltech, 2013

R. Berlemont, S.D. Allison & A.C. Martiny Metagenomics of microbial communities from the leaf litter - Insights intot the plant-polymer degradation. DOE Genomic Science Contractors-Grantees Meeting. 2013

M.W. Lomas, A.C. Martiny, S.B. Moran, T. Richardson, B. van Mooy. Small cells, the Redfield ratio and particulate carbon export in the ocean. IMBER IMBIZO 2013.

A.G. Kent and A.C. Martiny. Geographical differentiation of the genome content of the marine cyanobacterium Prochlorococcus. Southern California Systems Biology Conference. 2012.

C.S. Batmalle, S. Hsin-i, K. Zhang, M.W. Lomas, A.C Martiny. Implementation of next-generation sequencing using Nextera on the marine cyanobacteria Prochlorococcus and Synechococcus. ISME-14. 2012

C.S. Batmalle, M.W. Lomas, A.C. Martiny. Metagenomic Sequencing of Prochlorococcus and Synechococcus field populations using cell sorting and whole gemome amplification. Southern California Geobiology Conference, UC Riverside, 2012

A.E. Zimmerman, S.D. Allison, and A.C. Martiny. Phylogenetic diversity of cellular stoichiometry among marine bacteria. ISME-14. 2012.

Nyyssönen, M., Weihe, C., Goulden, M., Treseder, K., Martiny, A.C., Martiny, J., Allison, S.D., E. Brodie. Reconciling phylogeny and function during plant litter decomposition by high-throughput functional metagenomics. ISME-14. 2012.

A.C.Martiny. Phylogenetic conservatism of functional traits in microorganisms. ISME-14. 2012.

A.G. Kent and A.C. Martiny. Geographical differentiation of the genome content of the marine cyanobacterium Prochlorococcus. ISME-14. 2012.

A.G. Kent and A.C. Martiny. Cluster analysis of Prochlorococcus gene abundance from widely distributed oceanic samples. NIBIB Training Grantees Meeting. 2012.

Hatosy, S., Fields, A.J., and A.C. Martiny. Widespread potential of antibiotic resistance in marine habitats. ASM Annual Meeting. 2012.

Unsworth, D., Russell, J.W., and A.C. Martiny. Presence of Staphylococcus aureus in the collegiate dance environment. IADSM. 2012.

Nyyssönen, M., Weihe, C., Goulden, M., Treseder, K., Martiny, A.C., Martiny, J., Allison, S.D., E. Brodie. Reconciling phylogeny and function during plant litter decomposition by high-throughput functional metagenomics. Genomic Science Contractors-Grantees Meeting. 2012.

Berlemont, R. and A.C. Martiny. Phylogenetic distribution of potential cellulases in bacteria. DOE Genomic Science Contractors-Grantees Meeting. 2012.

Berlemont, R and A.C. Martiny. Distribution of potential for cellulose utilization in bacterial lineages. 4th Annual Argonne National Laboratory Soil Metagenomics Meeting. 2012.

Abedrabbo, S., S.M. Hatosy, A.C Martiny. Diversity and its limits: Variation within cyanobacterial ecotypes. Excellence in Research Symposium. UC Irvine. 2011

Freitas, S., S.M. Hatosy, A. Martiny. Spatial and temporal variation of Verrucomicrobia. Undergraduate Research Opportunity Program Symposium. 2011

Hatosy, S.M., V. Neino, J. Lee, T. Tran, H. Bui, A. Heetland, D. Ho, C. League, B. Takagi, S. Kathuria, S. Allison, A. Martiny. Multi-temporal scale variation of enzyme activity. ISME-13. 2010

C.S. Batmalle, M.W. Lomas, A.C. Martiny. Metagenomic Sequencing of Prochlorococcus field populations using cell sorting and whole gemome amplification. ISME-13. 2010